PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006857-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 305aa    MW: 34501 Da    PI: 6.9672
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006857-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072542872154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp+++++++L +++gL+ +q+ +WF N+R +
  NNU_006857-RA 254 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 287
                    469*****************************87 PP
2ELK26.31.7e-09208229122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK +L++++++++ ++++E++
  NNU_006857-RA 208 ELKIELKQGFRSRIEDVREEIL 229
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.4E-193983IPR005540KNOX1
PfamPF037903.6E-174182IPR005540KNOX1
SMARTSM012567.1E-2497152IPR005541KNOX2
PfamPF037913.2E-18100151IPR005541KNOX2
PROSITE profilePS512139.184208228IPR005539ELK domain
PROSITE profilePS5007111.645228291IPR001356Homeobox domain
SMARTSM003891.7E-10230295IPR001356Homeobox domain
SuperFamilySSF466893.38E-16230294IPR009057Homeodomain-like
CDDcd000868.47E-11231292No hitNo description
Gene3DG3DSA:1.10.10.605.4E-25235293IPR009057Homeodomain-like
PfamPF059201.0E-17248287IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MQQPGLGMLG HGVGGGSIGG LHDDVSVSVS VAVPADQQRQ LKAEIATHPL YEQLLAAHVG  60
CLRVATPIDH LPLIDAQLAQ SHHILRSYAS RHQQQHHVLS PHERQELDNF LAQYLLVLCS  120
FKEQLQNHVR VHAVEAVMAC REIEQSFQAL TGVTLGEGTG ATMSDDEDEL QMDSALDQPG  180
SDGHDMMSFG PLLPTESERS LMERVRQELK IELKQGFRSR IEDVREEILR KRRAGKLPGD  240
TTTILKNWWQ QHSKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSQSVTTLK  300
SKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284304RKRNWHSNSQSVTTLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255584.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-166KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1U8A3210.0A0A1U8A321_NELNU; homeobox protein HD1-like
STRINGXP_010255584.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-163KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]