PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006870-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 153aa MW: 17081.3 Da PI: 10.918

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006870-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.4	3.4e-32	56	105	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ NNU_006870-RA 56 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 105 79**********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-41	48	107	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.571	48	108	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-30	49	108	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.00E-38	49	123	No hit	No description
PROSITE pattern	PS00350	0	50	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-33	50	70	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-27	57	104	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-33	70	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-33	85	106	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
PILAAVKKKG VCLFLSRGRL FHFLDRLSVV VSSGAVLLWE TLREKKKMGR GRVELKRIEN 60 KINRQVTFSK RRNGLLKKAY ELSVLCDAEV ALIIFSSRGK LYEFGSAGKI LYRVSTIEGN 120 KAQTVVAFSM RLAGSILGVI SFKKSSIDIC DEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-20	48	108	1	61	MEF2C
5f28_B	4e-20	48	108	1	61	MEF2C
5f28_C	4e-20	48	108	1	61	MEF2C
5f28_D	4e-20	48	108	1	61	MEF2C
6byy_A	4e-20	48	108	1	61	MEF2 CHIMERA
6byy_B	4e-20	48	108	1	61	MEF2 CHIMERA
6byy_C	4e-20	48	108	1	61	MEF2 CHIMERA
6byy_D	4e-20	48	108	1	61	MEF2 CHIMERA
6bz1_A	4e-20	48	108	1	61	MEF2 CHIMERA
6bz1_B	4e-20	48	108	1	61	MEF2 CHIMERA
6bz1_C	4e-20	48	108	1	61	MEF2 CHIMERA
6bz1_D	4e-20	48	108	1	61	MEF2 CHIMERA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU048640	1e-71	GU048640.1 Nelumbo nucifera voucher FLAS:Yoo & Koh 1002 AGL6 (AGL6) mRNA, partial cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	3e-36	AGAMOUS-like 6