PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006906-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 163aa MW: 18409.8 Da PI: 10.4195

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006906-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.4	1.4e-32	88	142	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtp+LH+rFve v++LGG+ekAtPk+i++lm+ +gLt+ hvkSHLQkYR+ NNU_006906-RA 88 KTRIRWTPDLHKRFVESVNRLGGAEKATPKRIRKLMDSEGLTNFHVKSHLQKYRI 142 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.99E-17	86	142	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.1E-29	86	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	88	143	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	92	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
SYTNLPGIEL HPLLQPKLVG EDATFDSRNP SIPYERNQNH RVGYNPVTSL PLAQPSLHVQ 60 PEKRSLRPRG VSVASGSTVT SETETSSKTR IRWTPDLHKR FVESVNRLGG AEKATPKRIR 120 KLMDSEGLTN FHVKSHLQKY RIAKYIADLQ KPEGESFLET QKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	88	145	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	88	145	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	88	145	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	88	145	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	87	145	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265860.1	1e-76	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	2e-27	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1U8ASR3	2e-75	A0A1U8ASR3_NELNU; myb family transcription factor PHL5-like
STRING	XP_010255682.1	1e-105	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	7e-30	G2-like family protein