PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_006931-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 285aa MW: 32200.6 Da PI: 9.1956

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_006931-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.8	2.5e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+av++LGG++kAtPk++l++m++kgLtl+h+kSHLQkYRl NNU_006931-RA 21 KPRLRWTPDLHDRFVDAVTKLGGPDKATPKSVLRVMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.781	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	18	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	21	76	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-16	21	77	IPR009057	Homeodomain-like
Pfam	PF00249	6.2E-9	23	74	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-24	125	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MERTCGSYAL ETGMVLSRDP KPRLRWTPDL HDRFVDAVTK LGGPDKATPK SVLRVMGLKG 60 LTLYHLKSHL QKYRLGKQSK KGTNIEQAKS EELSVDSVGD SGYNHMHFSA TSSSTSKENS 120 ERGIPIAEAL RYQIEVQRRL QEQLEVQKKL QIRIEAQGKY LQAILEKAQK SLSTDTKCPR 180 SLEATRAQLT DFNLALSGLM ENMNQVREDE SKGEMIGKSL LNDNQENNHS SGFQLYRELE 240 EAKKKEIKIK VEESSLLFDL NVKGGYDFLG PKGSELDPNM NIQRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010255718.1	0.0	PREDICTED: myb family transcription factor PHL11 isoform X1
Refseq	XP_010255719.1	0.0	PREDICTED: myb family transcription factor PHL11 isoform X1
Swissprot	C0SVS4	3e-79	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A1U8A238	0.0	A0A1U8A238_NELNU; myb family transcription factor PHL11 isoform X1
STRING	XP_010255718.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-65	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]