PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006942-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family DBB
Protein Properties Length: 213aa    MW: 23475 Da    PI: 4.7512
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006942-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.1e-07344439
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   + C+ ++e++   +C+++  +lC +C  + H+       H++
  NNU_006942-RA  3 QLCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                   57*****************************65677777776 PP
2zf-B_box21.55e-074689441
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C++++ + ++  C + +  lC+ C  ++H +      H++++
  NNU_006942-RA 46 LLCERCNYQSAIVRCIEEKISLCQACDWNGHGNstsgsaHKRQT 89
                   57*****************************5589999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.67147IPR000315B-box-type zinc finger
SMARTSM003364.1E-10147IPR000315B-box-type zinc finger
CDDcd000214.29E-7447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGQLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNYQSAIVRC  60
IEEKISLCQA CDWNGHGNST SGSAHKRQTI KSYSGCPSAA ELSRIWSSVL DFPSMDDSNC  120
EQGLGLMSID ENNISNCWDH PENNNIIDFA CASXLDELEN ADKFGIWMGS SSMPALSPME  180
CGVDHLVGSI DSTTTKVTFD FKSVYGELNR MNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255740.11e-148PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_010255741.11e-148PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_010255742.11e-148PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_010255743.11e-148PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-63COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A1U7ZNP91e-147A0A1U7ZNP9_NELNU; zinc finger protein CONSTANS-LIKE 10-like
STRINGXP_010255740.11e-148(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-66B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]