PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_006965-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family DBB
Protein Properties Length: 212aa    MW: 23620.6 Da    PI: 7.1425
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_006965-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-072566439
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                   + C+ +++    lfC+ ++ +lC +C  + H g       H++
  NNU_006965-RA 25 KPCDSCKSASTLLFCQADSAFLCFNCDAKVH-GanklasqHER 66
                   68***************************99.54677777765 PP
2zf-B_box16.22.2e-0567112342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+ +e+ + +  C+++   lC +  + +H+       H+++p+
  NNU_006965-RA  67 VWMCEVCEQAPTSVTCKTDVAALCVTYDQDIHSAnpltrrHERIPI 112
                    689*********************9988888955777777888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.0E-112269IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0822269IPR000315B-box-type zinc finger
PfamPF006437.6E-62566IPR000315B-box-type zinc finger
CDDcd000219.21E-62669No hitNo description
PROSITE profilePS501198.53265112IPR000315B-box-type zinc finger
CDDcd000212.43E-468112No hitNo description
SMARTSM003361.9E-570112IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKKREMVIDD ESGKGYPASW SLSAKPCDSC KSASTLLFCQ ADSAFLCFNC DAKVHGANKL  60
ASQHERVWMC EVCEQAPTSV TCKTDVAALC VTYDQDIHSA NPLTRRHERI PIVSFYESAA  120
SAMKSNIANL LVPDGLLKSS DNDDDHNDKE EDKPRGGRSC FLVTSKPKPY QTHGNTQFEV  180
RRLFLLQHGS LSRSRLRVVH GDEVSPPEQR QC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259762.19e-90PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ940T93e-46COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
SwissprotQ9SK539e-47COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A1U7ZYX62e-88A0A1U7ZYX6_NELNU; zinc finger protein CONSTANS-LIKE 5-like
STRINGXP_010259762.14e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.24e-49CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]