PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007057-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 702aa    MW: 78837.4 Da    PI: 5.0418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007057-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14489535455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  NNU_007057-RA 489 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 535
                    7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-539186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19487550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.95E-15489539No hitNo description
PfamPF000101.2E-11489534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18489551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17491540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MTTPGSNRLQ QMLQSAVQSV QWTYSLFWKI CPQQGILVWG DGYYNGPIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNQPARR PCAALSPEDL TETEWFYLMC VSFSFSPGVG  120
LPGKAFARRH HVWLTGANEV DSKTFSRAIL AKTVLCIPLM DGVVELGFTE RVQEDLGXIQ  180
QVKSFFVEHN HNPKPALSEH STSNPANSSE RSRFNSPSLP VMYSTVDPPV KMNQDNEEEE  240
EEEEEEEEEE EDDEDDDEVE SDSEAQTGPT SHRNAAQEPL RICEPTSQGA TTAEAAAEPS  300
ELMQLEMSED IRIGSPDDGS NNLDSDLHML GVGHSGMQTV QSDHQRQADS YRSESARRWP  360
PQSQGQFSNG LQPPSLAPQM EELEQEDSHY SQTVSTILQR NSSRWPEISS AVHAGCSAQS  420
AFSKWNSRND HLLLHLPLEG TSQWLLKYIL FTVPFLHNKY RDENSPKSRD GDTGARFRKG  480
TPQDELSANH VLAERRRREK LNERFIILRS LVPFVTKMDK ASILGDTIEY VKQLRRRIQD  540
LETRNRQMEE NERRSRGGGE SQKTSSSKEQ RSGPGNSGIT VQERTRGLAA GSDRRKLRIV  600
EGTGGAKAKV VDALSIVGNT VQVSIIESDA LLELQCPYRE GLLLDIMQML RELRFEITAV  660
QSSSTNGIFN AELRAKVKEN VNGKKPSIVE VKRAIHQIIN QY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-2291869192Transcription factor MYC3
4rqw_B8e-2291869192Transcription factor MYC3
4rs9_A8e-2291869192Transcription factor MYC3
4yz6_A8e-2291869192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493498ERRRRE
2494499RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255921.10.0PREDICTED: basic helix-loop-helix protein A-like
RefseqXP_010255923.10.0PREDICTED: basic helix-loop-helix protein A-like
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1U7ZUT40.0A0A1U7ZUT4_NELNU; basic helix-loop-helix protein A-like
STRINGXP_010255921.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-97bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]