PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007181-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family CPP
Protein Properties Length: 813aa    MW: 88991.6 Da    PI: 6.4695
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007181-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.54.2e-16507545240
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  NNU_007181-RA 507 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 545
                    589**********************************96 PP
2TCR50.44.5e-16592630139
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                    ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  NNU_007181-RA 592 RHKRGCNCKKSSCLKKYCECYQGGVGCSINCRCEGCKNA 630
                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.2E-16506547IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.614507632IPR005172CRC domain
PfamPF036381.3E-11509544IPR005172CRC domain
SMARTSM011142.9E-17592633IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11594630IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MDTPDRNQIG TPISKFEDSP VFNYINSLSP IKPVKSVHIT HTFNSLNFAS IPSVFTSPHI  60
SSQKESRFLR RHNFSDPLKS EFPDNRNGGR ASAGVLEDVD LSDCSADQQG CFAPERPIRG  120
VTMEPQDENS NLAIELPRTL RYDCGSPDNG LMPCHGIKTN PVPEIAGTPV SLVQIVQEFS  180
EERCSFETEA NLQEICQADQ NKEEGPGCDW ENLISDATDL LIFDSSTDTE VPKGHDQKLV  240
DPVTNSLTSL VSKFPQDTTN DLHKSESVGL VGSYEQNEME DPSTQPGEVV EQKETEQTLH  300
ILSTTILNKQ ANGDSSEKMD DKAGSIIPFG CKVNSIHHRG MRRRCLVFEI SGVHKKKLDN  360
DSNSSDSISS QSDGKNVSDD KQLVPIKPGS GSSPCILPGI GLHLNALATT SKDCRVVKHE  420
TLPSGRKLIS MPSSIASFHS FPPSSNPLKP IALNSMEGDR GPSDKEVQVK QDASQASAFG  480
VSEEFNQSSP KKKRHVRRLE HVGESDACKR CNCKKSKCLK LYCECFAAGV YCVEPCSCQE  540
CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRTSENTSET GDDSNKTPAS ARHKRGCNCK  600
KSSCLKKYCE CYQGGVGCSI NCRCEGCKNA FGRKDGPAPI GTEEAEPEEE ETETCEKNGV  660
DQSVQNNDVQ KEEQHSDSVL PITPSFQICR SSVQLPFSSS GKPPRSSILA IGSSPGLNAS  720
QKPGKSDIVH SQHKFEKHFQ VVPEDDTPEI LKGDCSPISG VKTSSPNCKR VSPPHLGLSP  780
TRKSGRKLIL QSIPSFPPLT PHHESRDFQL KFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-1851162914120Protein lin-54 homolog
5fd3_B8e-1851162914120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256140.10.0PREDICTED: CRC domain-containing protein TSO1 isoform X1
TrEMBLA0A1U8A3630.0A0A1U8A363_NELNU; CRC domain-containing protein TSO1 isoform X1
STRINGXP_010256140.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-149Tesmin/TSO1-like CXC domain-containing protein