PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007278-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 686aa    MW: 78838 Da    PI: 8.5422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007278-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.68.2e-21614673258
                    --SS-EEEEEEE--TT-SS-EEEEEE...-STT---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrC...tsagCpvkkkversaedpkvveitYegeHnh 58 
                    dD y WrKY  K++  s+fpr YYrC   ts+gC+++k+v++ ++dp++  ++Y g+H++
  NNU_007278-RA 614 DDDYGWRKYSEKNIPLSKFPRRYYRCiqgTSKGCSARKHVQQLDDDPNMSRVIYFGHHTC 673
                    79************************777777**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520588.84E-39207315IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-26209297IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.84E-39345559IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.4E-26357529IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.801.0E-20609673IPR003657WRKY domain
SuperFamilySSF1182905.49E-19612673IPR003657WRKY domain
SMARTSM007746.6E-24613675IPR003657WRKY domain
PfamPF031068.6E-20614673IPR003657WRKY domain
PROSITE profilePS5081119.726614671IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MNPRRRFRRL VVSVVVAPVV ANAEVINAID SFPISTPKHG DRSCQDKEQK KEEKSLAQGY  60
EEKVTSKKPH DSSDEEIGEA FSRAKRRKRE KILLPRVSEE AGTTRNEEPH DSSETRQKFN  120
RLPEYMKRCF LYTCLFPKDY EFEEKTLLQL WAAVDFFSLR DKRPKDLPPL PTGATPEDEG  180
RFCFRQLLFG SLFEKSSLAY PNGVPRTCIV ELPDSIENLK NLRYFNVSET PIRNLPESIC  240
SLTHLLTLKV RNCERLVHLP DGTYKLTNLR HLDLNGARQL TSMPPGVGKL TKLETLTTFI  300
VGVEEGFRIQ ELKDLDELRG SLALSNLDNV REESEATDAR LNFKKFLRKV EFQWSRLESK  360
AEKTLEKLLP PHQFLTELKI LYYGGAKFPS WLGMSKFSSL ATISLTNCRK CTQLPTLGKL  420
PWLKSLKLEE LHAIEEINHD VFCGHGEFEG FPKLESLEID GMRRLERWTG MVEGQMPLLR  480
RLIIIDCPSL TILPELLYLH SLQHLKISLC SKLLSLPEEG LPKLVQLLII MECPELENRC  540
KMGGYNWHKI EHIPNIWIGY RRISGTKPLE QCIADLNSIK RVEGSTPTRI EGMFLTTAKG  600
VQITKAEFVH HSDDDDYGWR KYSEKNIPLS KFPRRYYRCI QGTSKGCSAR KHVQQLDDDP  660
NMSRVIYFGH HTCVMSCSLS STHTAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-14614673968OsWRKY45
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590RRKREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256301.10.0PREDICTED: disease resistance protein RGA2-like isoform X1
RefseqXP_010256302.10.0PREDICTED: disease resistance protein RGA2-like isoform X1
TrEMBLA0A1U7ZVS10.0A0A1U7ZVS1_NELNU; disease resistance protein RGA2-like isoform X1
STRINGXP_010256301.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-16WRKY DNA-binding protein 55