PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007469-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 373aa    MW: 41678 Da    PI: 8.7256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007469-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07135158123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++Cp+Cg++F+ + +L++H+++ H
  NNU_007469-RA 135 FPCPICGEVFPKNQLLEQHQSLkH 158
                    89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0092135158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743135159IPR007087Zinc finger, C2H2
PROSITE patternPS000280137158IPR007087Zinc finger, C2H2
SuperFamilySSF563996.52E-16160372No hitNo description
Gene3DG3DSA:3.90.228.103.3E-5169274IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.107.5E-5306372IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MATICSFLNK FAALVLLLVH LGCFIFTTAD GPSSKKRKIS PQTTQSPSPL RPKSKSHETL  60
SSSWSYLKRI FSFKNQKKDI ETHPTTPILS SARSSQQLMP QPIVSASPLK RPIPSRKETD  120
ISVDQSSFPL RNDIFPCPIC GEVFPKNQLL EQHQSLKHAI SELVDGDSGK NIVQIIFETG  180
WKDKEKNPTI HRILKIHNSS KILSRFEEHR EYVKLKAARN GVRKRDERCI ADGNELLRFH  240
CSTFVCDLGI NGNSSLCTQQ FCSICGIIRS GFSAKMDGIL TLSSSWRAHV ALPDEIEEEF  300
AFMNVKRAIL VCRVVAGRIG IIGCDEDVAH KDESVFDSVV GRGSGVNSRL DEDELFVFNP  360
RAVLPCFVIV YSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256618.10.0PREDICTED: uncharacterized protein LOC104596971
TrEMBLA0A1U8A4B80.0A0A1U8A4B8_NELNU; uncharacterized protein LOC104596971
STRINGXP_010256618.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-110C2H2 family protein