PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007471-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 306aa    MW: 34847.4 Da    PI: 5.1992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007471-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.3e-07175218755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + r+RR++i ++ +eL +l+P  +      K++ ae+ + A +Y+k Lq
  NNU_007471-RA 175 VAARQRRRKITQKTQELGKLIPGgN------KMTTAEMFQAAFNYVKFLQ 218
                    677*******************955......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.011168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-11170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-10171224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-8171221No hitNo description
SMARTSM003531.6E-8174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4176218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MALGSCSNWW TLEHHNPEMS PFQQTQEEIA KELLGFCDNL NPTNTFFDPF LEPNDFLSTE  60
NYHHLLSCFS YPSDPMVTIS SESFPPNHLD FCCQYRHQYP KRQRTYDVDF CNSAYSISNS  120
FDGYTPNSFP VPKFLLEPDQ LLLPGTEVQV PPVSLSDIVD DKKKANRGNM SAQSVAARQR  180
RRKITQKTQE LGKLIPGGNK MTTAEMFQAA FNYVKFLQAQ VGILELMGSI QETSKDQFHI  240
EKLQVLVSPS VQEKLYLEEK CLVPLGFIQT VAKDYEIQSN PLISKELKLF GQADRRIDGE  300
PNAIQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161182KKKANRGNMSAQSVAARQRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257104.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A1U8A6S70.0A0A1U8A6S7_NELNU; transcription factor bHLH53-like
STRINGXP_010257104.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-27bHLH family protein