PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007473-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 139aa MW: 15696.2 Da PI: 9.816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007473-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	16	60	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + r+RR++i ++ +eL +l+P + K++ ae+ + A +Y+k Lq NNU_007473-RA 16 SVAARQRRRKITEKTQELGKLIPGgN------KMTTAEMFQAAFKYVKFLQ 60 5677*****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.258	10	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-12	12	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.46E-8	13	63	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	13	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-9	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-5	17	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MDDKKKANRG NMSTQSVAAR QRRRKITEKT QELGKLIPGG NKMTTAEMFQ AAFKYVKFLQ 60 AQVGILEFMG SIFQETGKDQ FHIEKLQVLV SPTIQEKLYL EEKCLVPLGS VQTIAKDHDI 120 QSNPLISEGL KLFGQSEHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	24	KKKANRGNMSTQSVAARQRRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257106.1	5e-99	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	3e-27	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A1U7ZXT4	1e-97	A0A1U7ZXT4_NELNU; transcription factor bHLH53-like
STRING	XP_010257106.1	2e-98	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-29	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]