PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007569-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 642aa    MW: 70568.3 Da    PI: 6.9918
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007569-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.6e-104474792254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     +yp+ ++++ LAk++gL+ +qV++WF N R +
  NNU_007569-RA 447 RPYPTDTDKQMLAKQTGLSRSQVSNWFINARVR 479
                    79*****************************88 PP
2BELL115.72.4e-37307378172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +r e+++kk++L+s+l+eV++rYkqy++q+q+v++sFe v glg+a pYts+Alk++S+hF+cLk+ai++qi
  NNU_007569-RA 307 DRSEHRRKKTRLISMLDEVYRRYKQYYQQMQVVVASFESVPGLGNASPYTSFALKTMSKHFKCLKNAITDQI 378
                    5899*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-60244376IPR006563POX domain
PfamPF075263.7E-42249375IPR006563POX domain
PROSITE profilePS5007112.195420483IPR001356Homeobox domain
CDDcd000861.32E-13423484No hitNo description
SMARTSM003892.8E-11423487IPR001356Homeobox domain
SuperFamilySSF466891.58E-16425490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-27426487IPR009057Homeodomain-like
PfamPF059202.0E-18440479IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MAEGFEPFHV PQQSRRDKLR VVGQNHPTCE EAAATSLQGC AGLLPLYDPS LLTSEMLTCA  60
NAGTSEFHHQ NHPPLGGAGE GCKQNPACVV KEEGGNLMGY VGGFMNASSS SSSHHPYLDP  120
QSSLALNPSS IQDINSNPFL YTTHNLRDFD HSFHSGEVVT FKPEPLSLTP DSTTTGQGLS  180
LSLSTHNTRQ QNLPLELNLQ RYESAMFGDK GIGGFVVRGI GAGTGGASTS NDILRCSAPL  240
GPFTGYASIL KGSRFLKPAQ LLLEEFCGVG RGIYAERSCG DSSLMDSTME NLSAAGISVD  300
DPLGCGDRSE HRRKKTRLIS MLDEVYRRYK QYYQQMQVVV ASFESVPGLG NASPYTSFAL  360
KTMSKHFKCL KNAITDQICI MSKGLGEGCY EKDEAPRFGS SDRAFQCQRP VNNSGIVEHQ  420
HIWRPQRGLP ERAVAVLRAW LFEHFLRPYP TDTDKQMLAK QTGLSRSQVS NWFINARVRL  480
WKPMVEEIHM LETRQAQKAS ETEDRNTEKL VDHPPPENSL ATDKQPQNSS VQKTQDPPLK  540
RTRNDLPHVL NRSDVPMNFS YHNIPNQVGV SMSTVGINSG VSLTLGLQQN NGIGLSEPFT  600
MNIAHRFGLE ANNEGYVMGG FEAQNRQFGK DIGGQLLHDF VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15429487563Homeobox protein Meis2
4xrm_B1e-15429487563Homeobox protein Meis2
4xrs_A1e-15429486158Homeobox protein Meis1
4xrs_B1e-15429486158Homeobox protein Meis1
5bng_A1e-15429487159Homeobox protein Meis2
5bng_B1e-15429487159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256766.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-113BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A1U7ZT840.0A0A1U7ZT84_NELNU; BEL1-like homeodomain protein 9
STRINGXP_010256766.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-100TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]