PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007583-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 239aa MW: 27176.4 Da PI: 6.9853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007583-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.3	5e-07	70	121	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++ ++L l + + ++ +K +K+ iL A++ +++L NNU_007583-RA 70 TKACREKMRRDRLNDRHDNLFLELCSiLEPGRLPKADKVVILNDATRLLNQL 121 5678*********977777766666666699************99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.712	66	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-4	70	126	No hit	No description
Pfam	PF00010	1.5E-4	70	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-9	72	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-8	73	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDSDQNCSWF VEYMDDVQAA EYLWPPQVIS DQAVSGLGLG LEVLLKDENC AEKSCLKKRG 60 RIESSAGPGT KACREKMRRD RLNDRHDNLF LELCSILEPG RLPKADKVVI LNDATRLLNQ 120 LHLEAQKLKE TNDVLKVTIQ NLKVVIRCIP TDTEKVELRD EKVKLKAEKE RMEQMVKGLC 180 VPCPFVPHHT FPAATTTYSV NGKNIPYQPS YLSPMAMWQW MPSASWDTTQ DHVLRPPVA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256783.1	1e-154	PREDICTED: transcription factor ILR3-like
TrEMBL	A0A1U8A5X5	1e-153	A0A1U8A5X5_NELNU; transcription factor ILR3-like
STRING	XP_010256783.1	1e-154	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	2e-45	bHLH family protein