PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007606-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 305aa    MW: 34075 Da    PI: 7.8428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007606-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000165577123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  NNU_007606-RA 55 YTCSFCRREFRSAQALGGHMNVH 77
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-65281No hitNo description
PROSITE profilePS5015711.2195582IPR007087Zinc finger, C2H2
PfamPF139122.0E-55578IPR007087Zinc finger, C2H2
SMARTSM003550.00615577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQGRYWMWT KRKQCVGSHL PPSTTSLYND SWEEQAFAED SAGHLGGCIW PPRSYTCSFC  60
RREFRSAQAL GGHMNVHRRD RARLKQSPPT PHDEILYHHH QNHYPNHQNP CTSLGVQYPS  120
QLCTLVYSPN PNSNPGAIAS PLSPSRVSAP STQENCSEQA LVSPSYTSPI TQEHRKSSLL  180
SPPSSWSDTV AVRVLSLSDA AKIDGEKKPK TQESGCHVLG DYVKPDLAVS LNLVVHRDRP  240
SESADKEEEA NSRKRRRTDA STLPFLLQPS SVDIHHIQSE VVAVRPGSME DLDLELRLGD  300
RPKVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135077229superman protein
2l1o_A4e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256RKRRR
2252257RKRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090997e-41AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256822.20.0PREDICTED: uncharacterized protein LOC104597112
TrEMBLA0A1U8A4V10.0A0A1U8A4V1_NELNU; uncharacterized protein LOC104597112
STRINGXP_010256822.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-32zinc-finger protein 10