PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007607-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 895aa MW: 102046 Da PI: 5.7528

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007607-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H NNU_007607-RA 29 YECTFCKRGFSNAQALGGHMNIH 51 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.2E-4	27	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.38E-6	27	55	No hit	No description
SMART	SM00355	0.0099	29	51	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	29	56	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	31	51	IPR007087	Zinc finger, C2H2
Pfam	PF04646	1.6E-33	437	507	IPR006740	Protein of unknown function DUF604
Pfam	PF04646	2.4E-56	548	730	IPR006740	Protein of unknown function DUF604

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
METDRPSPEI SDQVAGSSDE QGPSPARSYE CTFCKRGFSN AQALGGHMNI HRRDRAKLKQ 60 PSNIRSHLTL DIAKKIPSSH PQLSSGYDSS PILESREERS GSSLNWTWIV NREEDVAAAR 120 QQETHVGELR QLSLFEETPS DGEHRQSSSD GHEERMQSTD GYWAREEPDL ELRLGPEPQD 180 TSTTVESVSR HLSLPYGYSH GRVAGQNFLE QDPLWKLEYQ FPEAGDERGG NCKILYRKFY 240 HRVEDERISN LATYSSLSIV FYSSFSSQAR WLRCSRCEGR VRNYGDQSET VRRISSEGYN 300 ERMGVSHILF GIGGSLKTWK DRRYYSELWW KPNITRGFVW LDDEPDNKDP WPETSPPYRV 360 SDHSSTLKYA KLYCSRPALR LARIVLESFQ LGLENVRWFV MGDDDTVFFV ENLVSVLSKY 420 DHNQMYYVGG NSESVEQDVM HSYDMAFGGG GFAISYPLAA EVVKVLDGCI DRYASLYGAD 480 QMIQACLSEI GVPLTKESGF HQVCMHGISS ISLPFTVPFR LVRYQFIRVT KEIITDIISP 540 VVVLQLKYQV DIRGDPYGLL ASHPVAPLVS LHHLDYVKPF FPTETQLESV RRLYGAYKAD 600 PGRTLQRSFC YDIKHNWSVS VSWGYTAQIY PYLLTAKEME SALQTFQTWR SWSNGPFTFN 660 TRPLSGLAPC ERPLIYLLEQ VNNDEIGQRQ TLTTYKRFVE DPGPGVVCNQ SIYGAALAAY 720 YVSVSASKFD GGEWKKVRIF ENAWVHGFSF RPVLVTSMKR RKRVAKRTRT ELPRDAEPEE 780 DIRERTQIFS QGIEDAKKKV VDEYIASPSF DDLIVDSYRR GFKLSRWMIQ NMYPELDISA 840 ISTSRITQEM ANVADGEPDS EGETGPSGIV EVPSDNEEVA LSLLNFFFEM YTLTL

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

METDRPSPEI SDQVAGSSDE QGPSPARSYE CTFCKRGFSN AQALGGHMNI HRRDRAKLKQ  60
PSNIRSHLTL DIAKKIPSSH PQLSSGYDSS PILESREERS GSSLNWTWIV NREEDVAAAR  120
QQETHVGELR QLSLFEETPS DGEHRQSSSD GHEERMQSTD GYWAREEPDL ELRLGPEPQD  180
TSTTVESVSR HLSLPYGYSH GRVAGQNFLE QDPLWKLEYQ FPEAGDERGG NCKILYRKFY  240
HRVEDERISN LATYSSLSIV FYSSFSSQAR WLRCSRCEGR VRNYGDQSET VRRISSEGYN  300
ERMGVSHILF GIGGSLKTWK DRRYYSELWW KPNITRGFVW LDDEPDNKDP WPETSPPYRV  360
SDHSSTLKYA KLYCSRPALR LARIVLESFQ LGLENVRWFV MGDDDTVFFV ENLVSVLSKY  420
DHNQMYYVGG NSESVEQDVM HSYDMAFGGG GFAISYPLAA EVVKVLDGCI DRYASLYGAD  480
QMIQACLSEI GVPLTKESGF HQVCMHGISS ISLPFTVPFR LVRYQFIRVT KEIITDIISP  540
VVVLQLKYQV DIRGDPYGLL ASHPVAPLVS LHHLDYVKPF FPTETQLESV RRLYGAYKAD  600
PGRTLQRSFC YDIKHNWSVS VSWGYTAQIY PYLLTAKEME SALQTFQTWR SWSNGPFTFN  660
TRPLSGLAPC ERPLIYLLEQ VNNDEIGQRQ TLTTYKRFVE DPGPGVVCNQ SIYGAALAAY  720
YVSVSASKFD GGEWKKVRIF ENAWVHGFSF RPVLVTSMKR RKRVAKRTRT ELPRDAEPEE  780
DIRERTQIFS QGIEDAKKKV VDEYIASPSF DDLIVDSYRR GFKLSRWMIQ NMYPELDISA  840
ISTSRITQEM ANVADGEPDS EGETGPSGIV EVPSDNEEVA LSLLNFFFEM YTLTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	59	RRDRAKLKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256824.1	0.0	PREDICTED: uncharacterized protein LOC104597114
TrEMBL	A0A1U7ZX20	0.0	A0A1U7ZX20_NELNU; uncharacterized protein LOC104597114
STRING	XP_010256824.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	2e-15	C2H2 family protein