PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007617-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 247aa MW: 26885.5 Da PI: 7.0234

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007617-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.7e-39	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ eq +++fa+vhk+FGasnv+kll++lp ++r++a+ ++ yeA ar+ dP+yG+v++il+lqqq+++lk+e++ NNU_007617-RA 10 SCGACKFLRRKCSSGCVFAPYFCYEQgANHFAAVHKVFGASNVSKLLSHLPVHNRSEAALTISYEALARMGDPIYGCVAHILALQQQVAHLKEEIE 105 6***********************89*****************************************************************9 PP DUF260 96 llkee 100 l+++ NNU_007617-RA 106 FLGNQ 110 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.328	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-36	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAGVGSSSSS CGACKFLRRK CSSGCVFAPY FCYEQGANHF AAVHKVFGAS NVSKLLSHLP 60 VHNRSEAALT ISYEALARMG DPIYGCVAHI LALQQQVAHL KEEIEFLGNQ VACLANDATP 120 VSRPSCQAQT TTETANWFQV SSQRDTMDVQ YGLNHQPLFD HNLSHAVKAS TTTGTVEIIN 180 SEMNAQLPPL YMLDNQNLYC HTTTISPNGL ERLSIMGVQQ EILPSVTVPL MQNTRTRAPF 240 NQPPLGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-33	6	105	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-33	6	105	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256834.1	0.0	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9M2J7	1e-54	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A1U8A621	0.0	A0A1U8A621_NELNU; LOB domain-containing protein 29-like
STRING	XP_010256834.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	7e-57	lateral organ boundaries-domain 29

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]