PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007655-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 627aa MW: 70849.7 Da PI: 6.3803

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007655-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	395.4	6.1e-121	251	621	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL++cA+ v+++d ++a +lL+++++++sp gd +qRla+yf+e+L+arla+++s++y al++++ts +++l+a++l+ ++P+ k+s++ NNU_007655-RA 251 LRTLLIHCAQSVAADDRRNAGELLKQIRQHSSPFGDGNQRLAHYFAEGLEARLAGTGSQIYTALATKRTS---AADTLKAYHLYLSACPFKKLSNF 343 6789**********************************************************999999...9****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++Il+ +e+++r+HiiDf+i +G+QWp+L+++L++Rp+gpp+l Tg++ p++g +e++eetg+rL+++Ae++gvpfe+n+ +a+++e+++ NNU_007655-RA 344 FSNRTILNLAEKATRLHIIDFGILYGFQWPCLIHQLSKRPGGPPKLIFTGIDLPQPGfrPAERVEETGRRLTNYAESFGVPFEYNA-IAQKWETIQ 438 ****************************************************9*************************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +e+L+++++E l+Vn+ ++ +llde+v +es+r++vL+l+++l+P+++++ + ++++ F++rf eal ++s++fd+le+++pre++eri +E NNU_007655-RA 439 IEDLKIERDEILIVNCLYRFRNLLDETVVVESPRNAVLNLIRRLNPDIFIHGVVNGAYSAPFFVTRFREALFHFSSVFDMLETNVPREDQERILIE 534 ******************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 re++gre+ nv+aceg+er+er et+++W+ r ++aGF+++pl+++++k+a+ ++ + + + ++e+s+++++gWk+r ++++S+W NNU_007655-RA 535 REIFGREALNVIACEGSERVERPETYKQWQVRNTRAGFRQLPLDQEIMKKARDRVKSSYHKDFVIDEDSQWMLQGWKGRIIYALSSW 621 *******************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.05	225	602	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-118	251	621	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MNGIRFNDDP VSFQNIVNKL KLEETIVNPI GSLPLLQPDP NPSTVPSSST VSEEESHEEL 60 DFSDVVLNSS NSGTSTVDGF LESSVSTVQV PEIISECESV WQFQKGVEEA SKFLPNGNNL 120 ILDLDTYPLF PRKPKEEVKD VVVKVEQKDE REHSPNGSRG RKNPHPEDTD LEEGRSNKQS 180 AVYAEPTVRS EEFDKVLLCT GGKEESSLSI LQEALHNGTS KNSHQNGHSK GSNGGKSRGK 240 KHGGRKEVVD LRTLLIHCAQ SVAADDRRNA GELLKQIRQH SSPFGDGNQR LAHYFAEGLE 300 ARLAGTGSQI YTALATKRTS AADTLKAYHL YLSACPFKKL SNFFSNRTIL NLAEKATRLH 360 IIDFGILYGF QWPCLIHQLS KRPGGPPKLI FTGIDLPQPG FRPAERVEET GRRLTNYAES 420 FGVPFEYNAI AQKWETIQIE DLKIERDEIL IVNCLYRFRN LLDETVVVES PRNAVLNLIR 480 RLNPDIFIHG VVNGAYSAPF FVTRFREALF HFSSVFDMLE TNVPREDQER ILIEREIFGR 540 EALNVIACEG SERVERPETY KQWQVRNTRA GFRQLPLDQE IMKKARDRVK SSYHKDFVID 600 EDSQWMLQGW KGRIIYALSS WVPAHDS

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MNGIRFNDDP VSFQNIVNKL KLEETIVNPI GSLPLLQPDP NPSTVPSSST VSEEESHEEL  60
DFSDVVLNSS NSGTSTVDGF LESSVSTVQV PEIISECESV WQFQKGVEEA SKFLPNGNNL  120
ILDLDTYPLF PRKPKEEVKD VVVKVEQKDE REHSPNGSRG RKNPHPEDTD LEEGRSNKQS  180
AVYAEPTVRS EEFDKVLLCT GGKEESSLSI LQEALHNGTS KNSHQNGHSK GSNGGKSRGK  240
KHGGRKEVVD LRTLLIHCAQ SVAADDRRNA GELLKQIRQH SSPFGDGNQR LAHYFAEGLE  300
ARLAGTGSQI YTALATKRTS AADTLKAYHL YLSACPFKKL SNFFSNRTIL NLAEKATRLH  360
IIDFGILYGF QWPCLIHQLS KRPGGPPKLI FTGIDLPQPG FRPAERVEET GRRLTNYAES  420
FGVPFEYNAI AQKWETIQIE DLKIERDEIL IVNCLYRFRN LLDETVVVES PRNAVLNLIR  480
RLNPDIFIHG VVNGAYSAPF FVTRFREALF HFSSVFDMLE TNVPREDQER ILIEREIFGR  540
EALNVIACEG SERVERPETY KQWQVRNTRA GFRQLPLDQE IMKKARDRVK SSYHKDFVID  600
EDSQWMLQGW KGRIIYALSS WVPAHDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	5e-54	257	623	24	379	Protein SCARECROW
5b3h_D	5e-54	257	623	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256895.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U7ZRM7	0.0	A0A1U7ZRM7_NELNU; scarecrow-like protein 9
STRING	XP_010256894.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]