PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007656-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 686aa    MW: 75361.1 Da    PI: 9.3262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007656-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07586635147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
    NNU_007656-RA 586 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 635
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542363.19E-7391482IPR029071Ubiquitin-related domain
PROSITE profilePS5005310.027396466IPR000626Ubiquitin domain
PROSITE profilePS5129414.453581640IPR017930Myb domain
SMARTSM007171.2E-7585638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10586636IPR009057Homeodomain-like
CDDcd116605.69E-17587637No hitNo description
SuperFamilySSF466891.45E-15587668IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MVLQKRLEYG FNGYQVPRAS RSARGRGSVR KKVHDNPMCA FDLLATVAGK LLQEGESSPA  60
PAKASARNDQ NPLVKHNLEA EQQDEERTLK VEPFDQGSCN ESVLVSGLGS EGHNRTHFLK  120
ENPQVQNAVA LRQTPATRNL NYSEKFTCAE KFIKGKSRNE FGCIPSKERK GSPSYGESYG  180
GKVEDGTVRE RETQKIGSVI NGTLPDSCSS EDPMEVDRKP PALISSDSSV DIPLCRDPIS  240
FPDDDVKVVN RDDDENSSGC TQPSPINVKF RPSGRIGDRR IRKLFASKYW KAAPKLSDGE  300
ISKPDGEMKP FSRNRKTCCT RQRSQRNSPF KKRKLLDQSS VSTSDGGISS IGISNSAEKG  360
VNEVTIGSGA IMRGASGTSS SVAGQQTAFQ PRDSHVRLSI KSFRVPELVI EIPETETVGS  420
LKRTVMEAVT AVLGGGLRVG VLLQGKKVRD DNKTLLQAGI SNDNKLDALG FTLEPNPTNS  480
PPPVCPEDPP FLLPCDAPQP INRYPTPAAL DPGTSEVSLV PPMTNLANCV ESDHDSVPSP  540
IDVSKDKITP DSRTLVAIPA MSVEALAVVP FNRKSRQSEL VQRRIRRPFS VSEVEALVQA  600
VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL  660
SAHAYWSQQQ AKQQQVKQQS ETCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575706741105Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277283DRRIRKL
2324333QRNSPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010256896.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_010256897.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1U8A5190.0A0A1U8A519_NELNU; telomere repeat-binding protein 5-like isoform X1
STRINGXP_010256896.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-125TRF-like 2