PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007688-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 160aa MW: 17366.7 Da PI: 8.9517

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007688-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.4	6e-25	43	112	1	70
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearar 70 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++++ A + NNU_007688-RA 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANTVSVAAPPPVV 112 7************************************************************988866555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.048	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-25	43	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MSRERERFDE IGKKIKREAD ALDRMGRRHI MLGPPGSLNT ITPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFASVHKVFG ASNVSKMLME VPESQRADAA NTVSVAAPPP VVAPTPSHSQ 120 PPPPPPPPLP ASSSSSSMYT PPSSSTDYSS ITNENVSYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-23	43	107	11	75	LOB family transfactor Ramosa2.1
5ly0_B	7e-23	43	107	11	75	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256944.1	9e-72	PREDICTED: LOB domain-containing protein 15
Swissprot	Q8L5T5	9e-59	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1U8A6C6	2e-70	A0A1U8A6C6_NELNU; LOB domain-containing protein 15
STRING	XP_010256944.1	4e-71	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	8e-58	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]