PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007725-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 588aa    MW: 64376.5 Da    PI: 6.4127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007725-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.41.6e-34239297160
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                    ldDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++++ei+Y+g+Hnh+k
  NNU_007725-RA 239 LDDGYNWRKYGQKQVKGSENPRSYYKCTFPDCPVKKKVERSL-DGQITEIVYKGNHNHPK 297
                    59****************************************.***************85 PP
2WRKY53.64.6e-174234612159
                    -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +sYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
  NNU_007725-RA 423 RKSYYKCTHVGCPVRKHVERASHDLRAVITTYEGKHNHD 461
                    589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29229298IPR003657WRKY domain
PROSITE profilePS5081124.57234298IPR003657WRKY domain
SuperFamilySSF1182904.71E-26234298IPR003657WRKY domain
SMARTSM007742.7E-38239297IPR003657WRKY domain
PfamPF031067.3E-26240296IPR003657WRKY domain
SMARTSM007742.5E-12415462IPR003657WRKY domain
SuperFamilySSF1182903.27E-14420463IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-15420463IPR003657WRKY domain
PfamPF031066.0E-12422461IPR003657WRKY domain
PROSITE profilePS5081121.597424463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MASSSGSLET SANSHPTPFS FSNQFMTSSF SDLLAGDDDK WLSDHFADRT GASVPKFKSI  60
PPPSLPISPP PVSPSSYFAI PPGLSPTDLL DSPVLLSASN LLQSPTTGTL PSQAFNWKSN  120
SVNYQHGIKK EEKNLPDFSF QPQTRPAMGS VSMFESSITT ISKDENSKGL EQEWNFQPTK  180
QADFSSGKPM VKSEYAPMQN FSHEISSIQA NNTQSNGGFQ SNHNQYSQPC QSFREQRRLD  240
DGYNWRKYGQ KQVKGSENPR SYYKCTFPDC PVKKKVERSL DGQITEIVYK GNHNHPKPQS  300
TRRSSSSSHR IQASAAPISE IPDPSFATRG VASQIMESGA TPENSSISMG EDDFEQSSQM  360
SRSAGDEFDE DEPNAKRWKT TTEGDQNEGI SAAGSRTVRE PRVIVQTTSD IDILDDDGEN  420
MGRKSYYKCT HVGCPVRKHV ERASHDLRAV ITTYEGKHNH DVPAARGSGS HLINRPTPDN  480
KNNNTAAAAN NVAMAAIRPT PTTNTFSPYS STNPLRSVRP PITAETQPPX TLEMLRSSHS  540
SPGNFGFSSG IGNSMPSYTN QSLHIDSSVF ATAKEEPGDD LFLESLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-17239463274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257005.10.0PREDICTED: WRKY transcription factor WRKY24-like isoform X2
SwissprotQ6B6R41e-117WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1U8A6I30.0A0A1U8A6I3_NELNU; WRKY transcription factor WRKY24-like isoform X2
STRINGXP_010257004.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-82WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]