PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007747-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 373aa    MW: 41197.7 Da    PI: 4.7497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007747-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1981131155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta eAa+a+++a+++++g
  NNU_007747-RA  81 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFATALEAARAYDEAARAMYG 131
                    56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1381131IPR001471AP2/ERF domain
CDDcd000182.00E-3181140No hitNo description
SuperFamilySSF541712.42E-2082139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-3182140IPR001471AP2/ERF domain
PROSITE profilePS5103221.53582139IPR001471AP2/ERF domain
SMARTSM003803.1E-3682145IPR001471AP2/ERF domain
PRINTSPR003677.2E-108394IPR001471AP2/ERF domain
PRINTSPR003677.2E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGACELVFNS TSLPLNHGRK RKSRSRRNGC ESIAERLSKW KEFNDQLDVA GDEGKLIRKV  60
PAKGSKKGCM RGKGGPENSR CNYRGVRQRT WGKWVAEIRE PNRGSRLWLG TFATALEAAR  120
AYDEAARAMY GPCARLNLPE CSTSKDSSYS ATTPSTSGST TTPSTSDSTT TSNHSEVCLS  180
EESKANVPKV EPKRELCEFG INSRPHIAME ADAPMSIVKK ESKEEESVQP MNPDLLRGYE  240
TSQDPVRSGQ FNGNGCGQED MQNFPTEELF DMEELLGMLD NDTPGPELQQ ELGVVSDQLQ  300
CGSPSDLSYQ LQNPDAKLLG SLYHMEQSPA SMDYSYDFLK PAEQDPMKQE GDYSYGLYGE  360
QGSLELGFPD LGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1682139260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A7e-16831401573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257031.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1U8A6L50.0A0A1U8A6L5_NELNU; dehydration-responsive element-binding protein 2C-like
STRINGXP_010257031.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.16e-52ERF family protein