PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007791-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 121aa MW: 13450.2 Da PI: 6.7875

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007791-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.8	1.4e-29	65	114	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH +Fv+ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ NNU_007791-RA 65 PRLRWTPELHLCFVQAVERLGGQDRATPKLVLQLMNIKGLSISHVKSHLQ 114 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-27	61	114	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.231	61	121	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-14	63	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-22	65	115	IPR006447	Myb domain, plants
Pfam	PF00249	9.3E-10	66	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MQGEGCENND GLKENPSNKS EDEEGDDEVM PKTSASSSNS TVEESEKKPS SGEGKMRQYI 60 RSKMPRLRWT PELHLCFVQA VERLGGQDRA TPKLVLQLMN IKGLSISHVK SHLQVILVGR 120 V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-19	66	114	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-19	66	114	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-19	66	114	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-19	66	114	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-19	66	114	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257082.1	9e-77	PREDICTED: uncharacterized protein LOC104597310
Swissprot	Q700D9	1e-25	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1U7ZXR5	2e-75	A0A1U7ZXR5_NELNU; uncharacterized protein LOC104597310
STRING	XP_010257082.1	4e-76	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-31	G2-like family protein