PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007801-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 159aa MW: 17458.1 Da PI: 10.5497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007801-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.2e-11	29	70	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f L++l+P +K++ +++Le+A++Y+k L NNU_007801-RA 29 AARQRRHRISDRFKILQSLVPGG-----TKMDTVSMLEEAIHYVKFL 70 569****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.739	21	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.77E-12	27	74	No hit	No description
SMART	SM00353	3.0E-13	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-12	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	28	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	30	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MASAISKEKK RGGKRSKGVK LSTDPQSVAA RQRRHRISDR FKILQSLVPG GTKMDTVSML 60 EEAIHYVKFL KTQIWLHQAM MNFLHDDSSS SSSSTSLLSP PDLVYSSAAA LATPSLPPPP 120 PPPPATPLGS MSTMERVETP KLVRNNRLLY QTAYICDHG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053268.1	2e-86	PREDICTED: transcription factor LAX PANICLE-like, partial
Swissprot	Q9M041	3e-32	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A1U8Q387	5e-85	A0A1U8Q387_NELNU; transcription factor LAX PANICLE-like
STRING	XP_010264777.1	2e-55	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	8e-32	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]