PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007843-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YA
Protein Properties Length: 192aa    MW: 21504.9 Da    PI: 9.8301
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007843-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.73.9e-331470158
      CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                   +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+Rg+gGrF
  NNU_007843-RA 14 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHLHAMRRARGCGGRF 70
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-371273IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.3371373IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-281570IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-241638IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601838IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-244770IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MHHPRMPLPL EMAEEPVYVN AKQYHGILRR RQSRAKAELE KKLIKVRKPY LHESRHLHAM  60
RRARGCGGRF LNTKKLNEES AKSIDEKGND SSAPLSTQSA SSSALEPLPS GCATNVNSSN  120
NQQERKGSSV QDMHQQQTYS NGNGCYQHNQ GFPLSNFHSS LSEERAEEGD YLGQQRGSIP  180
VNQAPNRALT IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-211474262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257210.11e-139PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
SwissprotQ945M93e-36NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A1U8A6Z81e-138A0A1U8A6Z8_NELNU; nuclear transcription factor Y subunit A-7-like isoform X1
STRINGXP_010257210.11e-139(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.14e-38nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]