PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007862-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 298aa    MW: 32808.3 Da    PI: 5.5542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007862-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-132379146
                     TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqk 46
                     +g W++eEd++l ++    G g            +W+ Ia++++ gRt++++k++w++
    NNU_007862-RA 23 KGLWSPEEDDKLMNYMLSNGQGcwsdvarnaglqRWSQIAARLP-GRTDNEIKNFWNS 79
                     678*****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-91855IPR009057Homeodomain-like
PROSITE profilePS5129415.5261885IPR017930Myb domain
SuperFamilySSF466892.5E-122089IPR009057Homeodomain-like
SMARTSM007176.5E-102283IPR001005SANT/Myb domain
PfamPF002498.9E-122379IPR001005SANT/Myb domain
CDDcd001671.31E-82678No hitNo description
Gene3DG3DSA:1.10.10.607.0E-125682IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MRKPENPGKN NRSNSNNTTK LRKGLWSPEE DDKLMNYMLS NGQGCWSDVA RNAGLQRWSQ  60
IAARLPGRTD NEIKNFWNST IKKRLKNSSS TSSPNNSDSS EPRVDVMGGL ISMTEHDIMA  120
MCMDSSSSSS SSPMQAMTMS NLQFETLPPL HNCSYDNISA TAGYFNVSQC LTQAGGGVGD  180
GFYGVHGMLG SSDINGLGGE LFVPSLESII LEKNTATDHS IHIHKIPRNS INDHVNNFST  240
INNFNNDNTH KSNNKVEGVM GVGSTHCWEG ENFRMGEWDL GNLIEDAPSF PFLDFQVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257250.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A1U7ZSI61e-179A0A1U7ZSI6_NELNU; transcription factor MYB46
STRINGXP_010257250.11e-180(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-35myb domain protein 83