PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_007880-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 345aa MW: 38892.1 Da PI: 8.4205

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_007880-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	4e-06	129	150	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg NNU_007880-RA 129 SICS-FAAAGNCPRGEKCPHIHG 150 6788.**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.605	1	28	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	1	27	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	3	26	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.2	28	49	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.099	33	50	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.174	125	152	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.019	126	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.1E-4	130	150	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF57850	3.03E-13	182	258	No hit	No description
Gene3D	G3DSA:3.30.40.10	6.0E-10	187	253	IPR013083	Zinc finger, RING/FYVE/PHD-type
CDD	cd00162	7.16E-4	193	253	No hit	No description
PROSITE profile	PS50089	12.209	194	252	IPR001841	Zinc finger, RING-type
Pfam	PF00097	4.4E-7	194	251	IPR018957	Zinc finger, C3HC4 RING-type
SMART	SM00184	3.2E-7	194	251	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	218	227	IPR017907	Zinc finger, RING-type, conserved site
SMART	SM00356	13	277	304	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.878	283	305	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MSKRILCKFF AHGACLKGEH CEYSHDWRDQ ANNKGACSYG SRCRYEHVKI SRLQHSVSSS 60 STNSHQHSSR ITSSGETALV PSFPAELSSL SRPFFPPGKP AWSHASGDYN FSDNENDRES 120 VIVRSADHSI CSFAAAGNCP RGEKCPHIHG DLCPTCGKHC LHPYRHDERE EHMKMCEKKK 180 KHLEALKRSQ EIECSVCLDR VLSKPTAAER KFGLLSECDH PFCISCIRSW RSSSPASGMD 240 VNTALRACPI CRKLSYFVIP SVIWYSTKEE KQEIINGYKA KLRYFDFGNG TCPFGTSCFY 300 KHAFRDGHLE EVVLRHLGAE DGNTVIAKDI RLSDFLGSLH LRLKK

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MSKRILCKFF AHGACLKGEH CEYSHDWRDQ ANNKGACSYG SRCRYEHVKI SRLQHSVSSS  60
STNSHQHSSR ITSSGETALV PSFPAELSSL SRPFFPPGKP AWSHASGDYN FSDNENDRES  120
VIVRSADHSI CSFAAAGNCP RGEKCPHIHG DLCPTCGKHC LHPYRHDERE EHMKMCEKKK  180
KHLEALKRSQ EIECSVCLDR VLSKPTAAER KFGLLSECDH PFCISCIRSW RSSSPASGMD  240
VNTALRACPI CRKLSYFVIP SVIWYSTKEE KQEIINGYKA KLRYFDFGNG TCPFGTSCFY  300
KHAFRDGHLE EVVLRHLGAE DGNTVIAKDI RLSDFLGSLH LRLKK

Functional Description ? help Back to Top
Source	Description
UniProt	E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257277.1	0.0	PREDICTED: E3 ubiquitin-protein ligase makorin isoform X1
Refseq	XP_010257279.1	0.0	PREDICTED: E3 ubiquitin-protein ligase makorin isoform X2
Swissprot	Q5ZA07	1e-155	C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBL	A0A1U7ZUI3	0.0	A0A1U7ZUI3_NELNU; E3 ubiquitin-protein ligase makorin isoform X1
TrEMBL	A0A1U8A604	0.0	A0A1U8A604_NELNU; E3 ubiquitin-protein ligase makorin isoform X2
STRING	XP_010257277.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	1e-120	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Sahi VP, et al. A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo. Plant Signal Behav, 2012. 7(3): p. 375-81 [PMID:22499205] Wadekar HB,Sahi VP,Morita EH,Abe S MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare). Planta, 2013. 237(4): p. 1083-95 [PMID:23262670]