PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007903-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 284aa    MW: 31788.4 Da    PI: 5.656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007903-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192978255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  NNU_007903-RA 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                   69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.63E-322888No hitNo description
SuperFamilySSF541712.62E-212987IPR016177DNA-binding domain
SMARTSM003805.3E-392992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6952986IPR001471AP2/ERF domain
PfamPF008473.9E-132978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-312987IPR001471AP2/ERF domain
PRINTSPR003671.5E-103041IPR001471AP2/ERF domain
PRINTSPR003671.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESCRKGPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLQP NSSPNKPNQF KWFPSKNFIS MFPSCDLLNI  120
NAQHNVHAIH QRLQELKRNS SSLNQLPPSS SSSSSFDSNS EFFITEDKCY IENSLAKQEE  180
AMLSSEQLLG GREEKPQIDL HEFLQQLGIL KEGSGSEGGD TLGSFPLPES LLEDDGLTAF  240
GEQTFNWGSL VDIHGLEGNQ GAVNSGIQVD IHEELTFPSS IWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257316.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX58e-81DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1U8A6340.0A0A1U8A634_NELNU; dehydration-responsive element-binding protein 2F-like
STRINGXP_010257316.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-72ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]