PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007909-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 298aa    MW: 34028.1 Da    PI: 6.6044
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007909-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.48e-075884128
           FAR1  1 kfYneYAkevGFsvrkskskkskrngei 28
                   +fYneYA +vGFsvrk+ ++k+++ g +
  NNU_007909-RA 58 NFYNEYAMRVGFSVRKDWKNKNRE-GCV 84
                   6*****************999954.334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005751.2E-488112IPR006564Zinc finger, PMZ-type
PfamPF044341.7E-488110IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVTLQLQFDS EGDHQSPEPV EGVHQSPEPV EGDGNEPNSS IKEPFVDMEF ESETHAYNFY  60
NEYAMRVGFS VRKDWKNKNR EGCVTGRSCK KFEFDGVLCC HAIKVLNHRN LKVVPQRYIL  120
KRWTKFAKVG IVENVHGSAY DVDPNLELLG RYQDVYHRFV KVAERAAESK EAYKYVAMKS  180
QEIMKEVENI ISKENSRNSN VNTSKGLTLE RGTVENTFVE GEHVDSDRNM VENSSNDATG  240
DVYTQPLQVR NLKRKEGCSH LVPPIDQRRP YIPRGNNIQP QTIALPVGQQ GQSFTFLQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257333.11e-149PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_010257334.11e-149PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_010257335.11e-149PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_019053373.11e-149PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
RefseqXP_019053374.11e-149PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLA0A1U8Q3I21e-147A0A1U8Q3I2_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRINGXP_010257327.11e-148(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-13FAR1 family protein