PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007987-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 723aa    MW: 79970 Da    PI: 9.9288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007987-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.4e-121162348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                      W t+E++ll++av+++G+++W+++a +++        +t+ +ck ++++++
    NNU_007987-RA 11 TWGTWEELLLACAVNRHGTNRWDSVAIEIQnrsstlHLLTAQNCKQKYHDLK 62
                     7**********************************9889*********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.1E-6864IPR001005SANT/Myb domain
SuperFamilySSF466894.81E-61069IPR009057Homeodomain-like
PfamPF002498.0E-111062IPR001005SANT/Myb domain
CDDcd001671.04E-61162No hitNo description
Gene3DG3DSA:1.10.10.602.3E-41263IPR009057Homeodomain-like
SMARTSM002971.5E-15324433IPR001487Bromodomain
SuperFamilySSF473701.57E-15331431IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.3E-13334436IPR001487Bromodomain
CDDcd043696.18E-14335428No hitNo description
PfamPF004393.3E-8342416IPR001487Bromodomain
PROSITE profilePS5001412.209343406IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MANNGVTETE TWGTWEELLL ACAVNRHGTN RWDSVAIEIQ NRSSTLHLLT AQNCKQKYHD  60
LKRRFTSKDD KTNEKEDESE TNDKKDVMPW LEELRKLRVA ELRREVERYD VSIVSLQLKV  120
KRLKEEREWS LREKENSVEK PDLEKDSEKF RAKEEQKERD DEPEKSSPEN VDGEPVTGEE  180
SDRENQSFNE SNSTDPKGGT RDNGVEESEK KREPVETITG RPDPVSGDLK PTGEGSCNGS  240
SDTVPKESAA PPVGKSLGSV KAREAGDSPE LWESMAESKG GGDEETKENS DVQSSASLSK  300
KNRRKAISGS SSGDEPETEE VSPAIKRISV KSEPLMSFLE IIRSHKYGSV FERRLDSQDT  360
TKYTSLVRQH VDLELVQSRL DEGRYNSCSS KFFRDLLLLF NNAIVFFAKY SPESVAAIAL  420
RELVTKEMAN RNTKKPDTSA DEPPQLPPVP LPTKLSSEPT DSLFAKPKSI GPIIACRKRS  480
SISAKASTAA IDRKGDLKPS TIGATATAVI DEKPLIDAKQ ADNVADEKKR MRDRLTTSGT  540
RSLRAGNKSR ATTTTSKILN ANSSQSPERS SSPPSGKGGV APEDSPEPKV EKKNNNTTAV  600
AKKRSAANFL NRMKRNSSSN GTLLETLKSS VNGSNNNKGV AGGVEQKKNS GKSDGRKDQS  660
PQQRSGGKHA REQRNPAKRS VGRPPKKAMR QTSLPPPVPS KRVRETVETE AMTSRQATKR  720
KRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257462.10.0PREDICTED: uncharacterized protein LOC104597551
TrEMBLA0A1U7ZYQ50.0A0A1U7ZYQ5_NELNU; uncharacterized protein LOC104597551
STRINGXP_010257462.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-75DNA-binding bromodomain-containing protein