PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007990-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 303aa    MW: 31375.7 Da    PI: 9.2378
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007990-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-08101126227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+ C+ f     Ck+G++C+FaHg+
  NNU_007990-RA 101 KTRMCNKFNTAEGCKFGEKCHFAHGE 126
                    89**********************96 PP
2zf-CCCH38.51.9e-12270294126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt+lC +fa+ G C +GdrC+FaHg
  NNU_007990-RA 270 YKTKLCENFAK-GSCTFGDRCHFAHG 294
                    9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.6954362IPR000571Zinc finger, CCCH-type
PfamPF146081.24859No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-1497131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.54499127IPR000571Zinc finger, CCCH-type
SMARTSM003560.06299126IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.41E-15169245IPR004088K Homology domain, type 1
SMARTSM003223.3E-12174244IPR004087K Homology domain
PROSITE profilePS5008414.403175239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.9E-16175243IPR004088K Homology domain, type 1
PfamPF000131.1E-11177241IPR004088K Homology domain, type 1
CDDcd001052.77E-13179239No hitNo description
Gene3DG3DSA:4.10.1000.101.4E-16265300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-9267299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99269296IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8269295IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10270294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDFGAARKRG RGDPALNGNG GLKRSKQGKC IGILAWDLSH ADHWLTAGCP FGEGCHFLHY  60
VPGGINTVAH MTNLADLAVP SSRNTVGHHP IPDGSAPPAV KTRMCNKFNT AEGCKFGEKC  120
HFAHGERELG KPIVSSHEDP RALGGAMTGG GRLAGRLEPP PPPPGLAAAA SFGASATAKI  180
SVDASLAGAI IGKGGVNSKQ ICRLTGAKLA IREHESDPNL RNIELEGTFD QIKQASAMVR  240
ELIVNIGSAA GPGKNPGVPA AAQAVAASNY KTKLCENFAK GSCTFGDRCH FAHGAADLRK  300
QGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511ARKRGRG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257466.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U7ZT200.0A0A1U7ZT20_NELNU; zinc finger CCCH domain-containing protein 14
STRINGXP_010257466.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-52C3H family protein