PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_007991-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 211aa    MW: 22936.9 Da    PI: 8.4737
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_007991-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.58e-08148165118
           GATA   1 CsnCgttkTplWRrgpdg 18 
                    C+ C tt+TplWR+gp g
  NNU_007991-RA 148 CAGCETTNTPLWRNGPKG 165
                    999*************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501149.209146165IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-6147165IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKEQDLLRRL EKFPGENPDI GVDCELRLGF SSSQPNPPPE NCRRFICDAL PPPPQVMTSY  60
AKGPPPTAAV NVNGYWATNG PNQIDWIPSL VGPRNYLLSS SSSGPNVINA SVGMGLLPMQ  120
RLNNVALMGY GFHMIAEANR RGDPIKRCAG CETTNTPLWR NGPKGFKGNK GLDENQDLVV  180
GDKYFPWAGQ PTGNSQTTQQ TAQANVNIKG Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257468.11e-121PREDICTED: GATA zinc finger domain-containing protein 12-like
TrEMBLA0A1U7ZUZ31e-120A0A1U7ZUZ3_NELNU; GATA zinc finger domain-containing protein 12-like
STRINGXP_010257468.11e-121(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-06GATA transcription factor 20