PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008009-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 387aa MW: 42475.7 Da PI: 5.7374

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008009-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	225	279	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k NNU_008009-RA 225 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 279 778899***********************************************98 PP
2	HD-ZIP_I/II	127.6	5.3e-41	225	315	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk NNU_008009-RA 225 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 315 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.3E-9	101	181	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	8.98E-18	220	282	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	221	281	IPR001356	Homeobox domain
SMART	SM00389	5.4E-15	223	285	IPR001356	Homeobox domain
CDD	cd00086	3.90E-16	225	282	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.0E-17	225	279	IPR009057	Homeodomain-like
Pfam	PF00046	5.3E-15	225	279	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	256	279	IPR017970	Homeobox, conserved site
CDD	cd14686	0.00814	274	313	No hit	No description
SMART	SM00340	9.8E-26	281	324	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	8.2E-11	281	315	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
FFKPTLSLLS LTETLLLALF ISCLFGFLLG LYETEMELGL SLGDASNAFA FVDKSHKVSA 60 KGLGFCMGLG VGIVNSREDE KLEADERDSA LKDSDEMEEK KDSTDPPIQL DLLPPGPVPR 120 KPPSSSQLIF PWPTENGNSE AGSSGHLGAT ARGFDVNRLP AAEDADDGAA VSSPNSTVSS 180 FQMDFSIYRG GSGGNKRDAE TSGNEVEAER ASSRASDEEE NGLTRKKLRL SKEQSAFLEE 240 SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE 300 NRRLQKELQE LRALKTSHPF YMQLPATTLT MCPSCERVAT TSTTPSPTTD ATAATTTPIP 360 NKASALSLTK HRFYPFSHAY AHPSAAS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

FFKPTLSLLS LTETLLLALF ISCLFGFLLG LYETEMELGL SLGDASNAFA FVDKSHKVSA  60
KGLGFCMGLG VGIVNSREDE KLEADERDSA LKDSDEMEEK KDSTDPPIQL DLLPPGPVPR  120
KPPSSSQLIF PWPTENGNSE AGSSGHLGAT ARGFDVNRLP AAEDADDGAA VSSPNSTVSS  180
FQMDFSIYRG GSGGNKRDAE TSGNEVEAER ASSRASDEEE NGLTRKKLRL SKEQSAFLEE  240
SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE  300
NRRLQKELQE LRALKTSHPF YMQLPATTLT MCPSCERVAT TSTTPSPTTD ATAATTTPIP  360
NKASALSLTK HRFYPFSHAY AHPSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	TRKKLRL
2	273	281	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257490.1	0.0	PREDICTED: homeobox-leucine zipper protein HOX11 isoform X2
Swissprot	P46665	1e-100	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A1U7ZV12	0.0	A0A1U7ZV12_NELNU; homeobox-leucine zipper protein HOX11 isoform X2
STRING	XP_010257489.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-79	homeobox from Arabidopsis thaliana