PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008116-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 874aa    MW: 96613.1 Da    PI: 6.8369
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008116-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94.1e-09408432227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    +t +Cr++a+ G+C +G++C+FaHgp
  NNU_008116-RA 408 GTGPCRYYAQ-GFCGRGETCPFAHGP 432
                    5779******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.2E-6406432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77406433IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6408432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6409432IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5410431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030394.104531874IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.104.3E-120548868IPR011989Armadillo-like helical
SuperFamilySSF483711.44E-106551868IPR016024Armadillo-type fold
SMARTSM000250.0024555590IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.407555590IPR001313Pumilio RNA-binding repeat
CDDcd079206.66E-140558868IPR033712Pumilio, RNA binding domain
PfamPF008069.6E-5559589IPR001313Pumilio RNA-binding repeat
SMARTSM000251.2E-11591626IPR001313Pumilio RNA-binding repeat
PfamPF008065.8E-12591625IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030213.074591626IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.527627666IPR001313Pumilio RNA-binding repeat
SMARTSM000250.26630666IPR001313Pumilio RNA-binding repeat
PfamPF008061.9E-5635662IPR001313Pumilio RNA-binding repeat
SMARTSM000250.24667702IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503024.604667690IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.877702738IPR001313Pumilio RNA-binding repeat
SMARTSM000251.3E-7703738IPR001313Pumilio RNA-binding repeat
PfamPF008062.1E-9706737IPR001313Pumilio RNA-binding repeat
SMARTSM000250.79739774IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.641739774IPR001313Pumilio RNA-binding repeat
PfamPF008062.0E-4740762IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.83775810IPR001313Pumilio RNA-binding repeat
SMARTSM000253.6E-5775810IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.457811848IPR001313Pumilio RNA-binding repeat
SMARTSM000250.098813848IPR001313Pumilio RNA-binding repeat
PfamPF008063.5E-4817839IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 874 aa     Download sequence    Send to blast
MEGGTDQDYD EFEMLLGEIP NATSGNPHSE DSGRTSSSVN MERIPRQEGE RKCSPSASFT  60
NFYNASQAAS SGSNSTFYDG LAFERTSANC VNPSQCSTNQ KLQINGNLDG GKIIVKSAHQ  120
SPVKNVDQDD SNLPDDQSLN SAFADLSFKD GMAVEAPTSQ FVKHNTLQNC TFLLDGQYPN  180
CLKKSLSSLG SGATVIPTPP NAPSGMNVVN GLNKLDIGMS CHENTKLLKL NVQELKKQNP  240
GSHQLLENLS GDIGEQLQSA QVYSPSTPLA AGLHAFQVVP NITVPGVEFP VTPFQQQCFL  300
DTQSPLPYMQ PQPLNQPHIT WRQLEEERYC RMHQQYLYLQ QLCNQGSDGQ VPTHASRNAA  360
FGSMTRDPRR PYFEIPISLQ LEQGSQGAIL NGAVIPRGLD SSDPTLTGTG PCRYYAQGFC  420
GRGETCPFAH GPKQSSASSL GCHPSSLTAK DFGPVKVLDK VVKQNFPEKI LTRSHGLNSI  480
RTIKPCSDVG NESLSHGNSN GRLLFDGHFQ YHPSILNAAS FQLDGRNSHG SSPDTVNPRH  540
INLKSPSQKY NSVDEVMGRI YLMAKDQHGC RFLQRKFTEG TKEDIDKIFL EIIGHIVELM  600
TDPFGNYLIQ KLLEVCDEDQ RMQILHAITR KAGDLVRISC DMHGTRAVQK VIETLNTPEQ  660
FSMVVSSLKP GIVMLIKNMN GNHVAARCLQ HLMPEYCEFL FEAATGHCVE LATDRHGCCV  720
LQKCLGHSDG EQRRRMICEI TSNALLLSQD PFGNYVVQYV FELRMPWATM DVLNQLEGNY  780
AYLSMQKYSS NVVEKCLKYA AEEHRPQIIQ ELINTSRLDQ ILQDPYGNYV IQAALNHSKG  840
TLHAALVEAI RPHVPALRTS PYGKKVLSCN NLKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A5e-7055386730350Pumilio homology domain family member 4
4dzs_B5e-7055386730350Pumilio homology domain family member 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257692.10.0PREDICTED: uncharacterized protein LOC104597686
TrEMBLA0A1U8A7250.0A0A1U8A725_NELNU; uncharacterized protein LOC104597686
STRINGXP_010257692.10.0(Nelumbo nucifera)