PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008138-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 415aa MW: 46767.4 Da PI: 7.225

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008138-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.1	4.8e-34	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG +kAtPkt+++lm++ gLtl+h+kSHLQkYRl NNU_008138-RA 33 KPRLKWTPELHERFVEAVNQLGGVDKATPKTVMKLMGISGLTLYHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.664	30	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-32	31	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-17	32	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-23	33	88	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-10	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-24	142	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MYHHHQGKTS FPSSRMSINV RGDTGLVLST DAKPRLKWTP ELHERFVEAV NQLGGVDKAT 60 PKTVMKLMGI SGLTLYHLKS HLQKYRLSKN LHGQANTGIN KNAVAGDRIS EASGAFISNT 120 SLCSQTNKEY ELKRISNIRS LQISEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS 180 VLEKAQETLG RQNLGSAGLE AAKVQLSELV SKVSTECLNS TLSELKELQD LHPQKTQTTQ 240 PTDCSMDSCL TSCEGSQKDQ EIHNIGVGLR SYYSNTSLGQ KEIVDDSRLE QPEHAWGEDQ 300 NENKMFCSSK GRDTERIMFP MKRNSSDLTM SIKVHGEKWN ASSFFTEATT KEGDEDDSFH 360 YQTGARRPVT NVENEKMSKG FRLPHLTPKL DLNSQEENDS TSTCKQFDLN GFSWT

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MYHHHQGKTS FPSSRMSINV RGDTGLVLST DAKPRLKWTP ELHERFVEAV NQLGGVDKAT  60
PKTVMKLMGI SGLTLYHLKS HLQKYRLSKN LHGQANTGIN KNAVAGDRIS EASGAFISNT  120
SLCSQTNKEY ELKRISNIRS LQISEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQS  180
VLEKAQETLG RQNLGSAGLE AAKVQLSELV SKVSTECLNS TLSELKELQD LHPQKTQTTQ  240
PTDCSMDSCL TSCEGSQKDQ EIHNIGVGLR SYYSNTSLGQ KEIVDDSRLE QPEHAWGEDQ  300
NENKMFCSSK GRDTERIMFP MKRNSSDLTM SIKVHGEKWN ASSFFTEATT KEGDEDDSFH  360
YQTGARRPVT NVENEKMSKG FRLPHLTPKL DLNSQEENDS TSTCKQFDLN GFSWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-21	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-21	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-21	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-21	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	32	89	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257717.1	0.0	PREDICTED: myb-related protein 2-like isoform X1
Swissprot	Q9FK47	1e-130	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1U7ZTQ3	0.0	A0A1U7ZTQ3_NELNU; myb-related protein 2-like isoform X1
STRING	XP_010257717.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-133	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]