PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008221-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 549aa    MW: 59218.2 Da    PI: 6.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008221-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08365413355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  NNU_008221-RA 365 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKALMLDEIINYVQSLQ 413
                    58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-16360431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-10360417No hitNo description
PROSITE profilePS5088815.345362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-16363429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-6365413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-9368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MDTRDKDKFG LEKSSDPVNY HSSNMSSDWR FGGANLTNQS MSLVPADNSI PVCKGNLMGS  60
SVPMVNSFCP TIWDHSNSQS LGFCDNNVQT TSNTVAIRKG LPGCSSTVSD KVLDLGWNSK  120
GGVFLQGNPG ILPQSLSQFP ADSDFIERAA RFSCLNFNDL VNPLNMPQSL SPYSKGGMVH  180
GPLEELSAGR LHPALGALSQ NNEPHLPEVA KEISPSAKLG ATEGSSMKNE RQTGNFVRPP  240
HEAKQGIGVS SHDSEEAEFS SGGGGGRDDP SMLESAGGEP SSSKGIGKKR KRSGQDNELD  300
QVKGAQQLPG EAAKDNTETN QKVEQNPIST NAKPTGKHSK DNSQASDAPK EDYIHVRARR  360
GQATNSHSLA ERVRREKISE RMKFLQDLVP GCSKVTGKAL MLDEIINYVQ SLQRQVEFLS  420
MKLAAVNPRL DFNIEGLLAK DILQSRGDPS TIVFSPDMAM AHPQLHPSQQ GLVQAGIPSM  480
ANPPDALRRT INSQLTAMNG GYKETTQLPN LWVDDELHNV VQMSLGSSVP FNSQELNGSL  540
PPGHMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KKRKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257873.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010257874.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010257875.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010257876.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010257878.10.0PREDICTED: transcription factor bHLH49 isoform X1
RefseqXP_010257879.10.0PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A1U7ZZP90.0A0A1U7ZZP9_NELNU; transcription factor bHLH49 isoform X1
STRINGXP_010257872.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-93bHLH family protein