PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008264-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family E2F/DP
Protein Properties Length: 217aa    MW: 24699.4 Da    PI: 9.8033
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008264-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP61.21.6e-1938822170
        E2F_TDP 21 eegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70
                    +gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwk
  NNU_008264-RA 38 ADGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNKIRWK 82
                   4599**********...99..****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.3E-162083IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-173782IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.62E-123781IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-193882IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVNSPLGTPV SGKGGRVYNK SRVPKHIKSG PQTPVPNADG ILDLNKAADT LEVQKRRIYD  60
ITNVLEGIGL IEKKLKNKIR WKPGEKDDDA TMLHAEVENL SMEEQRLDDR IRLLHCKEGN  120
EKIFLHTTVS LLTISPLLWP QQTTNHWGFI AISNAPSDYN DYYHHYRVVY PRPSEIPWKE  180
LSNSVHLIAP VQIKHLNFGK VLTWTRLGVK KPTSDIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-1539822872PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262959.18e-56PREDICTED: transcription factor E2FA-like
RefseqXP_019053996.18e-56PREDICTED: transcription factor E2FA-like
TrEMBLA0A1U8Q7H72e-54A0A1U8Q7H7_NELNU; transcription factor E2FA-like
STRINGXP_010262959.13e-55(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-32E2F transcription factor 1