PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008352-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 185aa    MW: 21782.1 Da    PI: 8.2199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008352-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.5e-25231501128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                    lp+G+rF Ptd+elv +yL +k+++k+l+++ +  i+  ++y+  P++L  ++   ++e++fF++ +     ++r  r++    g+Wk  g++++ 
  NNU_008352-RA  23 LPVGYRFIPTDQELVLHYLLNKLQSKPLPCSVIvdISADELYSKPPNQLGINL-FAREELFFFIHYNG----NHRVDRMVGdgIGRWKIIGEETST 113
                    799************************7773322567778*********8433.35679999998654....56899977723567********** PP

            NAM  93 lskkgel.vglkktLvfykgrapkgektdWvmheyrl 128
                    +s +g + v  k +L +y+g++++g++t+Wvm e +l
  NNU_008352-RA 114 YSWEGFEfVFKKISLCYYSGKRSRGRRTKWVMVEHHL 150
                    99866552666678********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-3115156IPR003441NAC domain
PROSITE profilePS5100528.13123179IPR003441NAC domain
PfamPF023652.9E-1424150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MECERVLQED SSTFDYHEGL MDLPVGYRFI PTDQELVLHY LLNKLQSKPL PCSVIVDISA  60
DELYSKPPNQ LGINLFAREE LFFFIHYNGN HRVDRMVGDG IGRWKIIGEE TSTYSWEGFE  120
FVFKKISLCY YSGKRSRGRR TKWVMVEHHL IREHKVKNTN LKVRTQKRSS ITICCLSFTH  180
LEFVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-161815010140Stress-induced transcription factor NAC1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-20NAC domain containing protein 47