PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008489-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 597aa MW: 65670.8 Da PI: 7.6062

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008489-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	235	295	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s NNU_008489-RA 235 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 295 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-31	232	292	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	237	293	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.975	239	293	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	241	277	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MLSRIEKGLH PLSFTERDGN HVRRSQGHKN LWLRIVPLLT WHTQLVKRTK INKTNDDDDN 60 LELDAETKTT TTTTTPTAPS PRQHYGAAHM NQHSDPAIKL FGKTIPLMSN DEMSAVSTDS 120 DAPTAANEEK LHKDRPSATT VQEQDNKSKK AGGQEQDEEE KDQSGGKPAK TEGEDGNGLP 180 PASVKEVTDH DTSLVINENP KTPSVDKETA TPKASKTEEE QSETSIPQEK TLKKPDKILP 240 CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKNSASHYRH 300 ITTSEALQTS RADAPDGVHH PTPNGTVLTF GSDAPLCESM ASVLNLAEKT MRNCTTRNGF 360 HRPEEQRIPV SSGAENGDDR SSGSSITASN HTEEGNRVSL QEPVMRNCHG FPPQIPYFPG 420 TPWPYPWNSA QWSSAVPPPA FCPSSFPISF YPAATYWGCT VPGTWNIPWI SQPPSSPSPG 480 GPGSSPNSPL GKHSRDGKVL KPSNSEKEDQ LKQNSSEKCL WIPKTLRIDD PSEAARSSIW 540 ATLGIKNDKP DSKTAGGLLK VFQPKGDDEK NHMAETSQVL QANPAALSRS LNFQERS

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MLSRIEKGLH PLSFTERDGN HVRRSQGHKN LWLRIVPLLT WHTQLVKRTK INKTNDDDDN  60
LELDAETKTT TTTTTPTAPS PRQHYGAAHM NQHSDPAIKL FGKTIPLMSN DEMSAVSTDS  120
DAPTAANEEK LHKDRPSATT VQEQDNKSKK AGGQEQDEEE KDQSGGKPAK TEGEDGNGLP  180
PASVKEVTDH DTSLVINENP KTPSVDKETA TPKASKTEEE QSETSIPQEK TLKKPDKILP  240
CPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR NVPVGAGRRK NKNSASHYRH  300
ITTSEALQTS RADAPDGVHH PTPNGTVLTF GSDAPLCESM ASVLNLAEKT MRNCTTRNGF  360
HRPEEQRIPV SSGAENGDDR SSGSSITASN HTEEGNRVSL QEPVMRNCHG FPPQIPYFPG  420
TPWPYPWNSA QWSSAVPPPA FCPSSFPISF YPAATYWGCT VPGTWNIPWI SQPPSSPSPG  480
GPGSSPNSPL GKHSRDGKVL KPSNSEKEDQ LKQNSSEKCL WIPKTLRIDD PSEAARSSIW  540
ATLGIKNDKP DSKTAGGLLK VFQPKGDDEK NHMAETSQVL QANPAALSRS LNFQERS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258324.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A1U8A9S9	0.0	A0A1U8A9S9_NELNU; cyclic dof factor 2-like
STRING	XP_010258324.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-102	cycling DOF factor 2