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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_008514-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 296aa MW: 32311.6 Da PI: 8.3397 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 110.7 | 7.8e-35 | 60 | 117 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
++YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre++e
NNU_008514-RA 60 VITYKECLKNHAASLGGHAVDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRREPDE 117
579*****************************99********************9875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 1.0E-18 | 61 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 1.5E-29 | 61 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 6.6E-32 | 62 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 27.295 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 4.7E-30 | 192 | 258 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.51E-19 | 192 | 258 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 2.2E-25 | 197 | 253 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 296 aa Download sequence Send to blast |
MDLTATAITP NSSRRPQEAD ADTPSPTQPT KLTDHHISKP LSFGNGVLKR HHQNHTPSAV 60 ITYKECLKNH AASLGGHAVD GCGEFMPSPS ATPTDPTSLK CAACGCHRNF HRREPDEGAH 120 TLDYHHQHQQ HTPHQPIVAR CRSPNSASPP PLSSSYYPSA PHMLLALSTG LSGAPENHVN 180 TTAAATTAIV TPNPNGRKRF RTKFSQEQKE KMYAFSERLG WKMQKSDEEV VDEFCNEIGV 240 GKGVLKVWMH NNKHTFGKRD ANGNRSSVDA NENHSHSHHN DNSAHHVATN GSSSSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 1e-21 | 198 | 255 | 18 | 75 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010258352.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
| TrEMBL | A0A1U7ZVA4 | 0.0 | A0A1U7ZVA4_NELNU; zinc-finger homeodomain protein 9-like | ||||
| STRING | XP_010258352.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G28920.1 | 1e-62 | homeobox protein 34 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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