PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008541-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 250aa MW: 27608.4 Da PI: 7.5987

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008541-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.3e-05	29	77	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + erE+ Rd++N+ f eL l +a + + Ka++L A++ +++L NNU_008541-RA 29 KIHKAEREKLKRDHLNELFLELGNALEPA----RQNNGKATVLGDATRILQDL 77 567889**********************8....67788999999999888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.56E-4	25	82	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-7	27	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.614	27	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-11	27	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MEKEVNPVAE KPVCSSLPNK KSHGKIPKKI HKAEREKLKR DHLNELFLEL GNALEPARQN 60 NGKATVLGDA TRILQDLLAQ VECLKRQNAA LLSESHYVTI EKSELREENS ALEAEIEKLQ 120 SELQERVQCK PAWAAASAPL QNKSSGSHLP EDHHLTLPVL DSTLQPAPVV APVFVIPVHC 180 DLQVYPEPET VQTCKPPSQV SRPHARYPTP SDSWPAQLLA EQSYAAKEGL LSSKNTTVVR 240 GGEQVAGRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258393.1	0.0	PREDICTED: transcription factor bHLH47-like
Refseq	XP_010258394.1	0.0	PREDICTED: transcription factor bHLH47-like
TrEMBL	A0A1U8A9Z9	1e-180	A0A1U8A9Z9_NELNU; transcription factor bHLH47-like
STRING	XP_010258393.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-42	bHLH family protein