PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008676-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LSD
Protein Properties Length: 74aa    MW: 8080.57 Da    PI: 8.326
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008676-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD150.53.4e-16831124
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                   CggCrtlL+Y+rGA+sVRC++C+t
  NNU_008676-RA  8 CGGCRTLLMYTRGATSVRCSCCQT 31
                   ***********************9 PP
2zf-LSD149.76.1e-164770124
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                   Cg+C+t+L+YP+GApsV+CalC+ 
  NNU_008676-RA 47 CGQCHTMLMYPYGAPSVKCALCHY 70
                   **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.109.7E-4570No hitNo description
TIGRFAMsTIGR010538.5E-19535IPR005735Zinc finger, LSD1-type
PfamPF069434.6E-13831IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.9E-134473IPR005735Zinc finger, LSD1-type
PfamPF069438.2E-154771IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MEMAQLICGG CRTLLMYTRG ATSVRCSCCQ TTNLVRAASP PYAHVNCGQC HTMLMYPYGA  60
PSVKCALCHY ITNI
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258673.16e-48PREDICTED: protein LSD1
SwissprotQ2QMB35e-34LOL2_ORYSJ; Protein LOL2
TrEMBLA0A1U8A9H41e-46A0A1U8A9H4_NELNU; protein LSD1
STRINGXP_010258673.12e-47(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-33LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]