PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008735-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 352aa    MW: 39383.9 Da    PI: 5.069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008735-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20196246255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ k++g
  NNU_008735-RA 196 HYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFDTAIEAARAYDRAAFKMRG 246
                    7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-33195255IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23196255IPR016177DNA-binding domain
SMARTSM003806.4E-38196260IPR001471AP2/ERF domain
PROSITE profilePS5103224.342196254IPR001471AP2/ERF domain
CDDcd000181.42E-31196254No hitNo description
PfamPF008476.3E-15196246IPR001471AP2/ERF domain
PRINTSPR003671.4E-10197208IPR001471AP2/ERF domain
PRINTSPR003671.4E-10220236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MATPDEASAL DLIRQHLLED FASFESFLNE LTPKINGIAT FGDKPQVLIS KSDSFASYTA  60
SSDVSASELK DGAFNGAFYP SMSGPLAPEP EIEISDYLKL NEKDDNGVLE LPPNRIPFDD  120
NQDVFFQFET KPQIADLTTP KSLSSSSSSS FNERRPSLKI SLPSVQKFEW SDFNEPAQPV  180
VTISNQKPSD SEERRHYRGV RQRPWGKFAA EIRDPNRRGS RVWLGTFDTA IEAARAYDRA  240
AFKMRGSKAI LNFPLEAGKT SDPPTNISRK RRRDIEAEET QVKEQVEMKP VKRERSPETE  300
NTTTSVSTAR PLTPSNWASV WETTDVQGIF NVPPLSPLSP HPSLGYHQLM VI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-29195255161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258783.10.0PREDICTED: ethylene-responsive transcription factor 5
TrEMBLA0A1U7ZWD70.0A0A1U7ZWD7_NELNU; ethylene-responsive transcription factor 5
STRINGXP_010258783.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-40ERF family protein