PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008759-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 26146.5 Da    PI: 8.2442
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008759-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.93.1e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++nrqvtfskRr g++KKA+ELSvLCda   +iifss+gk+yey+s
  NNU_008759-RA  9 KRIENTTNRQVTFSKRRGGLMKKAHELSVLCDAHLGLIIFSSSGKMYEYCS 59
                   79***********************************************96 PP
2K-box73.94.6e-2571162192
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                    yqk sg++ +e +++  + e++++k+e++ Lq + Rh+ GedL sL +++L+qLe+qLe+s++k+R++Kn+ll +q+++l++k  e+q + +
  NNU_008759-RA  71 YQKVSGTRIQEYDNQLVYSEMTRMKNETDRLQASMRHFTGEDLASLPYNDLHQLEEQLENSVNKVRARKNQLLNQQLDNLRRKLIEHQAAME 162
                    899999*****************************************************************************998876543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-34286IPR002100Transcription factor, MADS-box
CDDcd002651.25E-47276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003197.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2281165IPR002487Transcription factor, K-box
PROSITE profilePS5129714.7684171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FSKRRGGLMK KAHELSVLCD AHLGLIIFSS SGKMYEYCSS  60
QSSMQQIIER YQKVSGTRIQ EYDNQLVYSE MTRMKNETDR LQASMRHFTG EDLASLPYND  120
LHQLEEQLEN SVNKVRARKN QLLNQQLDNL RRKLIEHQAA MEHQQSLMEQ STEHTVLDHF  180
GLYAEEQGRN MLQLSTLSPQ INPYRLQPTQ PNLQETNLQG HGLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-21175173MEF2 CHIMERA
6byy_B3e-21175173MEF2 CHIMERA
6byy_C3e-21175173MEF2 CHIMERA
6byy_D3e-21175173MEF2 CHIMERA
6bz1_A3e-21175173MEF2 CHIMERA
6bz1_B3e-21175173MEF2 CHIMERA
6bz1_C3e-21175173MEF2 CHIMERA
6bz1_D3e-21175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053529.11e-162PREDICTED: MADS-box protein AeAP3-2-like
SwissprotQ9XGJ41e-84GGM13_GNEGN; MADS-box protein GGM13
TrEMBLA0A1U8Q3Y51e-160A0A1U8Q3Y5_NELNU; MADS-box protein AeAP3-2-like
STRINGXP_010258808.11e-161(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]