PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008771-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 197aa MW: 22883.1 Da PI: 4.3543

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008771-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.7	3.3e-17	85	152	1	67
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklk 67 ++Y++YA+e+GF+vrk +ksk+n+ ++ r+++Cskeg+ree+ kk + ++r+++etrtgC+akl NNU_008771-RA 85 QYYCNYAREMGFKVRKGGVRKSKKNDDVIGRRLYCSKEGFREERFKKlEACRKRHNPETRTGCQAKLL 152 69****************************************99956678889********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-15	85	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MENTSQRMNW ISQPQEDNES IYDMEEFEIE VDGLDEESSE EIDTHDEDED GDEIECPEGQ 60 EKKNEVDDGK PRVGMVFESE EHGFQYYCNY AREMGFKVRK GGVRKSKKND DVIGRRLYCS 120 KEGFREERFK KLEACRKRHN PETRTGCQAK LLETHTRGEC LSLLPYTFCQ QQPPSSINVD 180 LNDLTQHDAL APLSEQS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258820.1	2e-94	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010258821.1	2e-94	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010258822.1	2e-94	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010258823.1	2e-94	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010258824.1	2e-94	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A1U7ZYA6	4e-93	A0A1U7ZYA6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_010258819.1	1e-93	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-11	FAR1 family protein