PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_008810-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Dof

Protein Properties

Length: 155aa MW: 16793.1 Da PI: 10.0961

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_008810-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	13	69	6	62
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP+Ggg+rk ++++ NNU_008810-RA 13 PNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKTRRAK 69 68***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	1	67	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-32	13	67	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.351	13	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	15	51	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDHRWKPTVE VAPNCPRCAS ANTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPIGG 60 GCRKTRRAKS SKFPPTKAVS ISLGFSGDGP SSVANPMVVP TTAATDASNI DLAIVFAKFL 120 NQNSSLGSGL ATPEFSSEKE VDASLNISTL PTRMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010247650.1	1e-100	PREDICTED: dof zinc finger protein DOF1.2
Swissprot	Q9SVC5	7e-40	DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBL	A0A1U7Z5Q1	2e-98	A0A1U7Z5Q1_NELNU; dof zinc finger protein DOF1.2
STRING	XP_010247650.1	3e-99	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-42	Dof family protein