PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008818-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 413aa    MW: 44421.1 Da    PI: 8.0021
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008818-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.5e-41176253178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  NNU_008818-RA 176 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 253
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-35172238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.453174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.03E-38175256IPR004333Transcription factor, SBP-box
PfamPF031106.2E-32177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MENGGNGFSS NGGGGGGGGG GRGQNGNNVN HSWDFWELGT SRFDWSNSFN EDAVTTATTT  60
TTTAAAAHAI MFPHQGDNAH HHQYPSLYAA AGSHIHPDPH LTCLKLGKRH YFEDGTPFGE  120
RNVAAGFPIE KRGRSYGVGV GVGVGVGVGV GGPSSSAAAA ATMGAAGMGS TVAVPRCQVE  180
GCHVALVNAK DYHRRHKVCE MHSKAPKVVV LGIEQRFCQQ CSRFHVVSEF DDSKRSCRRR  240
LAGHNERRRK SSNDPISRNQ SQEQKSMGGR FSCISSSTGR ALSLLSSKSS SWVSPSDLSS  300
RSSAALRELI AENRAAILAR QLIFDRTWHH HAAMDELGGT QQPGLVSQMS HQTQAFPEST  360
EWDRFQDTGA HVTLDLMQAP SSPFGFLSGR TKSKEEEDEC CDIWKSLEGT HVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291772501184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258892.10.0PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ01JD15e-57SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLA0A1U8A2A20.0A0A1U8A2A2_NELNU; squamosa promoter-binding-like protein 7
STRINGXP_010258892.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.15e-35squamosa promoter binding protein-like 3