PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008831-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 491aa    MW: 53617.3 Da    PI: 7.2244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008831-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15319364555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  NNU_008831-RA 319 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 364
                    9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-19312375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-13319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18319372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-17319368No hitNo description
SMARTSM003532.2E-18320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNQCVPSWDL DETPTSAGGV SLRSLSNAVS AATDVPMLDC GRGGTDGGRR RRLDYEVTEL  60
TWENGQLALH GLGPPRPITK PLPSSATTTT TTKYTWEKPR AGGTLESIVS QATRSASAPC  120
KALFNGDDDL VPWFDPRGTA AAQSMTMDAL VPCTNRTTSA DDHCTRVPEP NPGVGTCAIA  180
CSTRLESSSE TGTLDRRLEQ EALAKKRPRL EHVPVEGSSK QSVSISASFG KDNSRQDMTL  240
DTYELDTEVG FTSTSLGSPE NTSTGHPRAS YTKSTTMVDD HDSVSHSRPE KESGFEEDKK  300
GQTGKSSIST KRSRAAAIHN QSERKRRDKI NQRMKTLQKL VPNSSKTDKA SMLDEVIEYL  360
KQLQAQVQMM SRMSMPHMML PMTMQQQLQM SMLAQMGMFM GMNMGMGTMD MNSVTRNNIA  420
GVPPVLHPNV LMTLPSWDGT GDRLPSSSTT MPDPLSTFLA CQSQPNNMDT YNRMVALYQQ  480
LYQSTTSNSK G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322327ERKRRD
2323328RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894232e-67KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258915.10.0PREDICTED: transcription factor UNE10 isoform X1
TrEMBLA0A1U8AB590.0A0A1U8AB59_NELNU; transcription factor UNE10 isoform X1
STRINGXP_010258915.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-92bHLH family protein