PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008835-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 490aa    MW: 53385.3 Da    PI: 6.6515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008835-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002884100319
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                    C++Cgk Fs++ ++  H
  NNU_008835-RA  84 CENCGKEFSSWKSFLEH 100
                    **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.21335IPR015880Zinc finger, C2H2-like
PfamPF139120.00481435IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SMARTSM0035520082102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.56E-7222245No hitNo description
SMARTSM003550.13223245IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-9223247IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076223250IPR007087Zinc finger, C2H2
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-7300327No hitNo description
PfamPF139125.6E-13304328IPR007087Zinc finger, C2H2
SMARTSM003550.44305327IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369305327IPR007087Zinc finger, C2H2
PROSITE patternPS000280307327IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAMTVDQQPG FKHFCRVCKK GFGCGRALGG HMRAHGIGDE AGQMEDEDQA SDWEDKLGGN  60
TPPGNKRMYA LRTNPNRLKS CRICENCGKE FSSWKSFLEH GKCSSEDVES LVSSPLPGSD  120
DEDGAGRRGC GWSKRRRSMR TKVGNSNSNC PSSEEEDLAN CLVMLSTARV DPLVAETEES  180
CASASKEEER RNPVGVVVPV PSANRISASN IVEKAKGVAR GMFECKACKK VFNSHQALGG  240
HRASHKKVKG CFAARLDDHD ESLVEEDVIT HDEFLIPTKS NAILPFEQAS QPPLAIPAKR  300
KSKVHECSIC HRVFSSGQAL GGHKRCHWVT SNSPDTSSIA KFHQFQDQTQ QLHQRPKFNK  360
SEPLDLNLPA PVDDIAGVRQ DPENPLSFDV PTAIFLQPWI GIDTNTNSDH HHHHPPHAHL  420
NNEDNNEDNN NNTTTTTNAN TSVLNVDDEA DSKVKLAKLS ELKDMSMGGG SSPWLQVGIG  480
STGNGGGGDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258926.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8A2D10.0A0A1U8A2D1_NELNU; zinc finger protein ZAT9-like
STRINGXP_010258926.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-26C2H2-like zinc finger protein