PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_008836-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 357aa    MW: 39566.4 Da    PI: 5.0272
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_008836-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043228250123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k+F++   L  H  +H
  NNU_008836-RA 228 YQCGTCKKVFRSYQALGGHRASH 250
                    9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.367431IPR007087Zinc finger, C2H2
PfamPF139126.3E-6428IPR007087Zinc finger, C2H2
SMARTSM003550.16426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723228255IPR007087Zinc finger, C2H2
PfamPF139121.0E-10228252IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-7228250No hitNo description
SMARTSM003550.098228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-7281308No hitNo description
PfamPF139122.9E-11286310IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182286313IPR007087Zinc finger, C2H2
SMARTSM003550.28286308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280288308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MERHSCKLCF KRFANGRALG GHMRSHMATL PPQPKAQQIH PLGDETESAS SSSPSSSSSS  60
SGEEEREEEE EEGEGEEEEE EKAALYYGLR ENPKKSFRLV DPEFSFAVDA GSVVQDRESE  120
TESSRNPSWR RSKRNRKSSI AEQQHQQEQR TELKKPRSSK PSKTESTAEP EPVSSVSDTT  180
PEEDVALCLM MLSRDIWMRE EEEEGEKSID ESDDSEELKF PTRTRGKYQC GTCKKVFRSY  240
QALGGHRASH KKIRGCTPSS SPAARTHEAE SELGNAGTSV VDRRIHECPV CFRVFASGQA  300
LGGHKRSHLS GSATAANSTK FGDNLIDLNL PAPLEDDDIS QVELSAVSDA EFVDPIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258927.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1U7ZWR30.0A0A1U7ZWR3_NELNU; zinc finger protein ZAT1-like
STRINGXP_010258927.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-48C2H2-like zinc finger protein